PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0032s0310.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 395aa MW: 43825.8 Da PI: 4.8966 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 9e-18 | 172 | 269 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 k l++sdv+++gr+vlpk+ +ee+ + +e++ l+l+d s+++W +k+++ ++ks++yvl+ ++ eFvk ngL++gD+++++ SapurV1A.0032s0310.1.p 172 KDLKKSDVGSLGRIVLPKREVEENlpPLHDKEGILLVLRDvNSNQEWGLKFKFwaNNKSRMYVLE-NTGEFVKLNGLETGDSLTLY- 256 77899*********************55556889******7788*******88888889999999.********************. PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++++++l++++ + SapurV1A.0032s0310.1.p 257 -EDESKNLYFSITK 269 .6688889998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-25 | 166 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 170 | 271 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-19 | 170 | 271 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-20 | 171 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-14 | 172 | 269 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.20E-19 | 174 | 269 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010344 | Biological Process | seed oilbody biogenesis | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MENVFPTSST NSGSASNPTN ASSVMTGCPQ NSQPNYTTPP CETTEFPPAY SLEQRSQYTP 60 SADPFYPVMV GPDAIEMQGP CILQPNALQL EQERRALDAN KTKVARCVRK LARQRRLGKA 120 SSGGSSARIK DTSRLGLHGA TIDSQNSRTN TGKDLYEFLT PDNKKLRALL RKDLKKSDVG 180 SLGRIVLPKR EVEENLPPLH DKEGILLVLR DVNSNQEWGL KFKFWANNKS RMYVLENTGE 240 FVKLNGLETG DSLTLYEDES KNLYFSITKA QAPASALTQT PLPMSQNNNY LYTEHTWQDR 300 DEEYTSLALL TEQLENEEQE EANSLGAVPM DFSCSYTHEP ELNDIRTYTQ PASAAMQSSP 360 ANGKMKAVDD SHDVDDCYTG LGMLPDVHSY NFSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 2e-48 | 160 | 267 | 3 | 110 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-48 | 160 | 267 | 3 | 110 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00032 | PBM | Transfer from AT1G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0032s0310.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043404.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor LEC2-like | ||||
TrEMBL | A0A2K1YFW8 | 0.0 | A0A2K1YFW8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05380.1 | 1e-142 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12348 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 4e-48 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0032s0310.1.p |