PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0027s0240.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C3H | ||||||||
Protein Properties | Length: 326aa MW: 36458.6 Da PI: 8.2078 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.9 | 8.3e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G+C yG+rC++ H+ SapurV1A.0027s0240.6.p 34 ICTFYQK-GICLYGSRCRYDHV 54 7******.*************7 PP | |||||||
2 | zf-CCCH | 21.3 | 4.6e-07 | 139 | 161 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++Gd+C+ +Hg SapurV1A.0027s0240.6.p 139 RSICS-FAAAGSCPRGDKCPHIHG 161 67899.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.892 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.1E-4 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0022 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 139 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 141 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.03E-9 | 198 | 269 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 3.5E-10 | 200 | 264 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00101 | 204 | 264 | No hit | No description |
SMART | SM00184 | 3.4E-7 | 205 | 262 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.1E-7 | 205 | 262 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.357 | 205 | 263 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 229 | 238 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 10.85 | 292 | 321 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSKRLLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GICLYGSRCR YDHVKSSRPE 60 STASSSLAIL ASNSVSLTLP ARTVSSGATA LLSVTPELSA SSRPFIASTM PAWNLESVQH 120 DFLEDGEVIQ SRNVNPADRS ICSFAAAGSC PRGDKCPHIH GDLCAYCGKH CLHPFRPDER 180 DEHLKACEKK QKNLDLLKYS QEIECSVCLD RVLSKPTVAE RKFGLLSECD HPFCISCIRN 240 WRSSSPTSGM DVNSSLRACP ICRKLSYFVI PSVIWYSSKE EKQEIVDTYK EKLRSIDCKH 300 FDFGNGNCPF GTSCFYKKPR RVANW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0027s0240.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208479 | 0.0 | AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025420.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like | ||||
Swissprot | E0X9N4 | 1e-154 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A2K1Z3S0 | 0.0 | A0A2K1Z3S0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s06730.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-143 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0027s0240.6.p |
Publications ? help Back to Top | |||
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