PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0027s0240.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 359aa    MW: 40079.7 Da    PI: 7.963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0027s0240.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.4e-093454526
                            --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            +C f+++ G+C yG+rC++ H+
  SapurV1A.0027s0240.4.p 34 ICTFYQK-GICLYGSRCRYDHV 54
                            7******.*************7 PP
2zf-CCCH21.25.2e-07139161326
                             S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                             +++C+ fa+ G C++Gd+C+ +Hg
  SapurV1A.0027s0240.4.p 139 RSICS-FAAAGSCPRGDKCPHIHG 161
                             67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.892128IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-4327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5872956IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-43453IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056136163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022137162IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4139161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4141161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.09E-12198269No hitNo description
Gene3DG3DSA:3.30.40.104.1E-10200264IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.11E-4204264No hitNo description
SMARTSM001843.4E-7205262IPR001841Zinc finger, RING-type
PfamPF000972.4E-7205262IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.357205263IPR001841Zinc finger, RING-type
PROSITE patternPS005180229238IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.13292320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582292321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSKRLLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GICLYGSRCR YDHVKSSRPE  60
STASSSLAIL ASNSVSLTLP ARTVSSGATA LLSVTPELSA SSRPFIASTM PAWNLESVQH  120
DFLEDGEVIQ SRNVNPADRS ICSFAAAGSC PRGDKCPHIH GDLCAYCGKH CLHPFRPDER  180
DEHLKACEKK QKNLDLLKYS QEIECSVCLD RVLSKPTVAE RKFGLLSECD HPFCISCIRN  240
WRSSSPTSGM DVNSSLRACP ICRKLSYFVI PSVIWYSSKE EKQEIVDTYK EKLRSIDCKH  300
FDFGNGNCPF GTSCFYKHAY RDGRLEEVVL RHLGAEDGQS LIAKNIRLSD FLGSLQIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0027s0240.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442390.0EF144239.1 Populus trichocarpa clone PX0011_J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025420.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-179C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K1Z3S00.0A0A2K1Z3S0_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-165C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]