PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0025s0840.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SRS
Protein Properties Length: 317aa    MW: 34184.6 Da    PI: 8.3152
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0025s0840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702230.23.7e-71972464153
                  DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsals 87 
                             g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpa krrerqqqlaa+++++++++   + +++kr+re+ +  +s+l+
  SapurV1A.0025s0840.1.p  97 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAGKRRERQQQLAALQQQNQEQQqqfRGENPKRQREN-QGGASSLA 182
                             789*****************************************************9999888833344444444443.45556666 PP

                  DUF702  88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                             +t+l+++  ++ le++ +P+ev+s+avfrcv+vs++dd+e++laYqtav+igGhvf+GiLydqG++
  SapurV1A.0025s0840.1.p 183 CTRLATT--TSGLEMTAFPPEVNSQAVFRCVKVSAMDDAEDQLAYQTAVNIGGHVFRGILYDQGPD 246
                             6665555..56799999***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.3E-6898246IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.2E-26100142IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.9E-26197245IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAGWFYLGGR EGPSSKQDQE KEVNNSSLFL YRSSNEEIYN NNNKGFELWP QYFPQQQNMN  60
SFSFGVGPSR RSISDDHSPG SGFTVMRQGG GGGGLGGGMN CQDCGNQAKK DCPHLRCRTC  120
CKSRGFQCQT HVKSTWVPAG KRRERQQQLA ALQQQNQEQQ QQFRGENPKR QRENQGGASS  180
LACTRLATTT SGLEMTAFPP EVNSQAVFRC VKVSAMDDAE DQLAYQTAVN IGGHVFRGIL  240
YDQGPDGRYT STGGESSSSG AQQLGLITGA TTSTAATTAN TSNPAAGNTL FDPSSLYPAP  300
LNAFIAGTQF FPPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0025s0840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119663e-95AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450682.10.0protein SHI RELATED SEQUENCE 5
SwissprotQ9LQZ52e-97SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A2K2BCI11e-180A0A2K2BCI1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03000.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.13e-84SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]