PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0024s0790.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 22618.8 Da PI: 7.7147 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+k+C++apyf +q +++fa+vhk+FGasn +kll ++p +r+da+ +l yeA ar+rdPvyG+vg+i++lqqq SapurV1A.0024s0790.1.p 11 PCGACKFLRRKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLRIPAPKRPDAVVTLSYEALARVRDPVYGCVGHIFALQQQ 97 7*********************777769*********************************************************** PP DUF260 87 leqlkaelallkee 100 + +l+aela+++++ SapurV1A.0024s0790.1.p 98 VVNLQAELAYIQAH 111 *********99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.367 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-38 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSAGASNGSG PCGACKFLRR KCVKGCIFAP YFDPDQGTAH FAAVHKVFGA SNASKLLLRI 60 PAPKRPDAVV TLSYEALARV RDPVYGCVGH IFALQQQVVN LQAELAYIQA HLPTLQCLPS 120 PQPPPLCPQS HSLASLSSSS EVPSFSKLAS NSNISMHFDE LQLQPQQAPT ESTGFCDPSE 180 NGIDNEDLHE LARAFVSRCL PGVRPRPPNS P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-36 | 8 | 117 | 7 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-36 | 8 | 117 | 7 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0024s0790.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017497.1 | 1e-120 | PREDICTED: LOB domain-containing protein 19-like isoform X1 | ||||
Swissprot | O81322 | 6e-71 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2K2BIZ7 | 1e-118 | A0A2K2BIZ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s06580.1 | 1e-101 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 9e-60 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0024s0790.1.p |