PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0019s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 364aa    MW: 39262.9 Da    PI: 4.5334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0019s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-102893291055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  SapurV1A.0019s0320.1.p 289 RKRRERINERLRVLQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 329
                             9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14281346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-13284340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-12288333No hitNo description
PfamPF000101.7E-7289329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MESIGSLAEG EWSSLGGMYT SEEADFMAQL LGNGPSNQVD SSSNFGVPSG FWPNYEPTTY  60
MEGGSESSFY SLDFANINLH HFSQGSSSYS GGSGLPFPNS SQDSYYLSDS HPILVNNNSS  120
MSMDFCMGDS YLVEGEGDDC SNQEMSNSNE EPGGNQTVAA LPESNFRAKR ETEMPASELP  180
LEDKSCNPPQ IPKKRSRNSG DAQKNKKNSR SKKSQKVAST SNNDEESNAG LNGPASSGCC  240
SEDESNASHE LNRGASSSLS SKGTATLNSS GKTRASRGAA TDPQSLYARK RRERINERLR  300
VLQNLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSEDL WMYAPIAYNG MDIGLDQLKV  360
TAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0019s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001917.10.0PREDICTED: transcription factor bHLH84-like isoform X1
TrEMBLA0A2K1Z5430.0A0A2K1Z543_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-49ROOT HAIR DEFECTIVE 6-LIKE 2