PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0017s0470.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 366aa    MW: 41622.5 Da    PI: 9.0674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0017s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.8e-11256336183
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+  ++p +v ++  + +p   + +   +k ++++ l++   + r W  ++ y k+++   l++GWk+F+ +n+L e D++vF+
  SapurV1A.0017s0470.1.p 256 FLILMKPTHVCRKFFMAIPSAWIVKRiPIKGNQDVILRF---KDRAWHTRFFYHKSRDNGGLSAGWKKFALDNKLHEFDVCVFE 336
                             666788999999999******976665444335444444...5599*****9999999999**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-1022102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.61123121IPR003340B3 DNA binding domain
SMARTSM010190.01426104IPR003340B3 DNA binding domain
CDDcd100179.71E-726102No hitNo description
Gene3DG3DSA:2.40.330.103.6E-826103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-16256353No hitNo description
PROSITE profilePS5086310.25256355IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-12256338IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-9256338IPR003340B3 DNA binding domain
SMARTSM010192.7E-5256350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-14256352IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGEKTCKECR SWEDEIYWTH FQCIQFFQFL HSGFDQRLAI PEIFARHMRK KLPGTVNLKG  60
PSGSAWKVGL TTYNNTLFFN HENDFLIFKY NGESNFDVLM FNMQSMCEKV ASYFVKKYES  120
TERGNGSRTK RKTIKSSGEV VFASPKGVAG GSQPEEFIEN DTDAIPGGQP NDSRVTGKKI  180
CRGIKSTEAT EEDVVGGGFQ QVECSYNDSD TITPLNQPTR QPVDTVLHAR RGRKVTEQEK  240
RNAMQLAVRA VTANGFLILM KPTHVCRKFF MAIPSAWIVK RIPIKGNQDV ILRFKDRAWH  300
TRFFYHKSRD NGGLSAGWKK FALDNKLHEF DVCVFEPLDL VNCPIILNVN IFRVIEEATN  360
YLTIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0017s0470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301205.20.0B3 domain-containing protein REM16 isoform X1
TrEMBLB9GNZ50.0B9GNZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-66B3 family protein