PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0015s0980.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 608aa MW: 66407 Da PI: 9.2447 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H SapurV1A.0015s0980.2.p 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ SapurV1A.0015s0980.2.p 146 WKCEKCSKRYAVQSDWKAHSKTC 168 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-6 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.71E-7 | 69 | 92 | No hit | No description |
SMART | SM00355 | 0.0052 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.0E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 134 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.71E-7 | 141 | 166 | No hit | No description |
SMART | SM00355 | 130 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MAASSSSVPF FGTREEDQNQ MKQQHSSTPT SSSAQAPPPP KKKRNQPGTP NPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEVRRKV YLCPEPACVH 120 HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE SARNPPPNLN TFGSHLYGSS NMTLGSSQGA TQISSLQDHS 240 NQSTDVLRLG GGVRPGQFDH LFPPSIGSSS FRPPQQMPSS SFFMQETSQN YHDENQSHEQ 300 ELLQNKPFHH GMMQFADIHN TTSNPPSAGN IFNLSFLSSS STTNSNNANN PNNLPTSGLQ 360 ISEHFNNQND GGGGSEGTNN FSNNVMGNQM TSAVPSLFAT SVQNDNMVSH MSATALLQKA 420 AQMGSTSSNN SASLLRNFGS SSSSGAKSDR PLVDGNFGGM FSDSENNLHE LMNSFSPGNP 480 SIFGSGHAQE NPYGGYITNR TSLDQGKQPH GRNFSNINMD EAKLHQSLNA SNIGGSDRLT 540 RDFLGVGPQM VRSMSGSSGF SQREKQQQQR QHHGMDMADS SLDSERRNSN ISAAPTSQSF 600 GGKGSFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-34 | 142 | 203 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 7e-34 | 142 | 203 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0015s0980.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208494 | 0.0 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379802.2 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006379803.2 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006379804.2 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024463340.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024463341.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-144 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2K1ZH36 | 0.0 | A0A2K1ZH36_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s14180.4 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-134 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0015s0980.2.p |
Publications ? help Back to Top | |||
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