PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0014s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 289aa    MW: 32544.9 Da    PI: 4.8148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0014s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-162471148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT ++d ll+++++ +G g+W+t ar+ g++Rt+k+c++rw++yl
  SapurV1A.0014s0140.1.p 24 KGPWTIDDDSLLAQYITIHGEGHWNTAARRAGLNRTGKSCRLRWLNYL 71
                            79********************************************97 PP
2Myb_DNA-binding50.83.9e-1677120146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T eE++l+++++ +lG++ W++Ia+ ++ gRt++++k++w++
  SapurV1A.0014s0140.1.p  77 RGNLTLEEQLLILQLHSRLGNR-WSKIAQQLP-GRTDNEIKNYWRT 120
                             7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8651971IPR017930Myb domain
SuperFamilySSF466891.27E-2921118IPR009057Homeodomain-like
SMARTSM007172.0E-102373IPR001005SANT/Myb domain
PfamPF002491.8E-132471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-192578IPR009057Homeodomain-like
CDDcd001671.29E-82671No hitNo description
PROSITE profilePS5129424.14972126IPR017930Myb domain
SMARTSM007171.7E-1376124IPR001005SANT/Myb domain
PfamPF002499.8E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2279125IPR009057Homeodomain-like
CDDcd001674.96E-797120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDSQVRKYGY ARTESEDQGM GVRKGPWTID DDSLLAQYIT IHGEGHWNTA ARRAGLNRTG  60
KSCRLRWLNY LRPNVRRGNL TLEEQLLILQ LHSRLGNRWS KIAQQLPGRT DNEIKNYWRT  120
RVQKQAKQLK CDVNSKQFRD TMRCVWIPQL SEKIRAESES HMDQLSTSPP SYCSSQIDIP  180
VAASESGSDL FDPNFIPDIS VSSALSDALD AQASPWSDLT DYQNPPCGQY YSDSMQNGSG  240
SCPENDSGSW GWGWGWCQDG VDMQAMEQEG YGFIGGGESL ESLWNEEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-24241264105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0014s0140.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002746.11e-175PREDICTED: transcription factor MYB108-like
SwissprotQ10MB43e-72MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3N7EJQ81e-169A0A3N7EJQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s19250.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-65myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]