PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0012s0460.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 264aa MW: 28313.9 Da PI: 9.0057

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0012s0460.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	38	3.5e-12	5	28	38	61
zf-Dof 38 ryWtkGGalrnvPvGggrrknkks 61 ryWt GG++rnvPvGgg+rk k+ SapurV1A.0012s0460.2.p 5 RYWTLGGTMRNVPVGGGCRKGKRP 28 9*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-5	2	27	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-7	5	27	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSSLRYWTLG GTMRNVPVGG GCRKGKRPKT SSSSSSGENS LLQQQPQLLQ HNLATPQNIL 60 ATTNSGNSLS PPMRTKESGN LVSPPPGMSS MGSYFPGDGF LTSLEAIQSL KNSQPPLQSF 120 SFQPLNQPVN LGGDLGDTSN LGLLHGFSAV PAFGSQNQQQ RQFYHADNRD NKSVEHSFYP 180 QYDQERLIQS SRPAATSSHQ QQNWHQGYIS NSNPTVSDTV LWSISTSTTT GHTSSNINTG 240 NGGSSSLNPD QWRHDLPGNG PPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0012s0460.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305784.1	1e-152	dof zinc finger protein DOF1.4
TrEMBL	B9H2S7	1e-150	B9H2S7_POPTR; Uncharacterized protein
STRING	POPTR_0004s04590.1	1e-151	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-09	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0012s0460.2.p