PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0010s0900.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 506aa    MW: 55973.1 Da    PI: 6.1434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0010s0900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.72.2e-1001104981374
                    GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn........... 73 
                             lv+lL+++Aea++   ++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l + + ++ +  + set++             
  SapurV1A.0010s0900.1.p 110 LVHLLIAAAEALTGlnKNRDLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEG-TGGIHSNKHHSETNN-Gpyhhhhrddpq 194
                             68**********98446667************8887669*****************99.444444333333332.124455666777 PP

                    GRAS  74 ....sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg. 153
                                 +s++l a++l++++sP++kf+h+taNqaIleav+ ++r+Hi+D+di++G+QW++L+qaL sR+  +++p+lRiT+++++ s+ 
  SapurV1A.0010s0900.1.p 195 qrhhQSDVLGAFQLLQDMSPYVKFGHFTANQAILEAVADDRRIHIVDYDIMEGIQWASLMQALVSRKggRPTPHLRITALSRSGSSr 281
                             777788888899*******************************************************655678*********77776 PP

                    GRAS 154 .skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                 +++etg+rL  fAe++g+pf+f+    ++ e++++++L++ +gEal+ n++l+l ++  +  ++     ++L   k+l+P+++
  SapurV1A.0010s0900.1.p 282 rFIGTVQETGRRLVAFAESIGLPFSFHQCRLDSDETFRPSALKLVRGEALVMNCMLHLPHFSYRAPDSV---ASFLAGAKTLNPRLL 365
                             66679***********************9999****************************985555555...59************* PP

                    GRAS 240 vvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                             ++ve+e+   +++ F+ rf+++l++ysa++dslea++p + ++r  vEr++lg++i+  +a   +    r e++  W  +l + GF+
  SapurV1A.0010s0900.1.p 366 TMVEEEVGPiGDGGFVGRFMDSLHHYSAFYDSLEAGFPMQGRARGLVERVILGPRISWSLARIYRV---RGEEACPWGVWLAAEGFQ 449
                             ******9988******************************************************99...888899************ PP

                    GRAS 326 pvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                             pv++s  + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+S W+
  SapurV1A.0010s0900.1.p 450 PVKVSFANHCQAKLLLGVFN-DGYRVEEVaSNRLVLGWKSRRLLSASIWT 498
                             ********************.******754999****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.68684478IPR005202Transcription factor GRAS
PfamPF035147.7E-98110498IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MTMAIDGAQF ELELDFSGYS STTTTATIST ENDHDRGGNW NGWSPMVDWE TLSGPHDDFQ  60
DLIDSMMDDG ALMNQSIRLT PDTSNSMSAS GTVIVDEETS CGDDLKGLRL VHLLIAAAEA  120
LTGLNKNRDL ARVILVRLKE LVSPNDGTNM ERLAAYFTDA LQGLLEGTGG IHSNKHHSET  180
NNGPYHHHHR DDPQQRHHQS DVLGAFQLLQ DMSPYVKFGH FTANQAILEA VADDRRIHIV  240
DYDIMEGIQW ASLMQALVSR KGGRPTPHLR ITALSRSGSS RRFIGTVQET GRRLVAFAES  300
IGLPFSFHQC RLDSDETFRP SALKLVRGEA LVMNCMLHLP HFSYRAPDSV ASFLAGAKTL  360
NPRLLTMVEE EVGPIGDGGF VGRFMDSLHH YSAFYDSLEA GFPMQGRARG LVERVILGPR  420
ISWSLARIYR VRGEEACPWG VWLAAEGFQP VKVSFANHCQ AKLLLGVFND GYRVEEVASN  480
RLVLGWKSRR LLSASIWTSP SDPDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5111750125381Protein SCARECROW
5b3h_D2e-5111750125381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0010s0900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302249.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLB9GUD30.0B9GUD3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s08660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-165GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]