PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0010s0540.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 594aa    MW: 65461.7 Da    PI: 5.8929
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0010s0540.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24127228199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt+ d +g  W++++iyr++++r++lt+GW++Fv+ ++L +gD+v
  SapurV1A.0010s0540.2.p 127 FSKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVADIHGVNWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSV 211
                             88*********************999****985444444..9********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF+  ++ ++e++++v+r+
  SapurV1A.0010s0540.2.p 212 VFM--RNLKGEMFIGVRRS 228
                             ***..5689999****986 PP
2Auxin_resp84.12.9e-28272356183
              Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+++a+++ +FevvY+Pra++ s+Fvv++e ve+al v +++GmR+km +etedss+ ++ +Gtv+++   d   W++S+Wr+L+
  SapurV1A.0010s0540.2.p 272 AVERAAKGLPFEVVYYPRAGWySDFVVRAEVVEAALCVFWTAGMRVKMTMETEDSSRMTWfQGTVSSTGLPDCGAWRGSPWRMLQ 356
                             678999*************9779************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-33118230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-29122235IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-22127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605127229IPR003340B3 DNA binding domain
CDDcd100176.65E-20127227No hitNo description
SMARTSM010192.4E-20127229IPR003340B3 DNA binding domain
PfamPF065072.8E-26272356IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPPPPQLTEL SRVDPRIWRA CAGSSVQVPA VNSRVYYFPQ GHFEQSSSST VPHPPFISNF  60
ALSKPSIPCQ ISAVDFLADP ITDEVFTRIL LIPLDNPSSN LPLSFVESCR SEGVNDVDDD  120
ESKILAFSKI LTPSDANNGG GFSVPRFCAD SIFPPLNYQA EPPVQTLTVA DIHGVNWDFR  180
HIYRGTPRRH LLTTGWSKFV NNKKLIAGDS VVFMRNLKGE MFIGVRRSVR FNNSARWREQ  240
ISDSGGEGKV KVEEGFSRSW RGRLSQEAVV EAVERAAKGL PFEVVYYPRA GWYSDFVVRA  300
EVVEAALCVF WTAGMRVKMT METEDSSRMT WFQGTVSSTG LPDCGAWRGS PWRMLQITWD  360
EPDALQNAKR VSPWQVEFVA TTLPLQDASP PMKKLRYPHD SGFLTNGELF FPMSDLTNSR  420
TGHINASMLN YSTFPAGMQG ARQDPFSTFS LSNFISENAS QVLGDKVSGN NLAPKMKRMP  480
SEMNISSLQS GDLSPDNQSS AHSFGEDFTG NRSFNPQKVG ISSIQLFGKI IHMNQPVENG  540
FDTVGFMDNG SKGCNETEGV NALELSLTSS YTELLNRIDV QCQSASAVGA CSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-661337751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0010s0540.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301020.30.0auxin response factor 17
RefseqXP_024451916.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2K2BFU50.0A0A2K2BFU5_POPTR; Auxin response factor
STRINGPOPTR_0002s09050.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-178auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]