PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0009s1160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 351aa    MW: 38865.1 Da    PI: 10.2331
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0009s1160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.7e-1547130186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                             +W++  v +L+ea+++++   +r+klk+++We+v+ ++     +++  ++++qCk+k+e+++kry+ +  ++        s++p++ 
  SapurV1A.0009s1160.1.p  47 EWSEGAVSTLLEAYENKWILRNRAKLKGNDWEDVAHHVssraNSTKSPKTQTQCKNKIESMKKRYRSESSTADV------SSWPLYP 127
                             5*************************************88777778889999**************99887774......5799999 PP

                trihelix  84 qle 86 
                             +l+
  SapurV1A.0009s1160.1.p 128 RLD 130
                             886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-1945130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDKEVNRESP SLLPNSNTTI KEESPRKLFG CAGVVTGGGG DRLKRDEWSE GAVSTLLEAY  60
ENKWILRNRA KLKGNDWEDV AHHVSSRANS TKSPKTQTQC KNKIESMKKR YRSESSTADV  120
SSWPLYPRLD LLLRGNSAAA AVTPPPQVLP QHQQPSIPTS ANPPLMLLMD RSPLAVTQPP  180
APPMAPPHPP PPPPPHHHQT IRAAQNSHGS NGVDKGAKGD GMDAKLSDHV SEKNSMDTDS  240
SSTPAALYSD KEEPRSKKLK KKTEKRKRRK REEWEMADSI RWLAEVVVRS EQARMETMRE  300
LEKMRIEAEA KRGEMDLKRT EIIANTQLEI AKLFAGAGRA ADSSLRIGKT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269KRKRRK
2264270KRKRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0009s1160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2255731e-106CU225573.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020419.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A2I4KKZ20.0A0A2I4KKZ2_POPTR; Trihelix family protein
STRINGPOPTR_0003s19470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-94sequence-specific DNA binding transcription factors