PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0009s0400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 424aa MW: 47061 Da PI: 7.261 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 357 | 402 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +++L +Av+YIk+Lq SapurV1A.0009s0400.2.p 357 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 402 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.926 | 351 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-15 | 354 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.48E-12 | 355 | 404 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-14 | 356 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 357 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-11 | 357 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MESDLQHQHH FLHGHNQHQQ THQKQMNPGL TRYQSAPSSY FSSNLDRDFC EEFLNRPTSP 60 ETERVFARFL ANSGGKTEDI SSSSPCEIKQ DSPVRESISQ INQQPQMVAS MNIHSSDTRL 120 HQHQQQQQQQ SSYSASQGFY QSRSKPPLPD HNSGSGMNYR SMNSMGLERL PSVKLSSGNN 180 SNLVRHSSSP AGLFSDINIE FENGYAVLRG MGDPGAGKRD PAYSAAGRPP SSSGIMSPIA 240 EMGNKNTGEN SPDSGGFGEA PGNDYVSSYP IGSWDDSAMM SIDSKRHLTD DDRILSGLNS 300 SETQNEEAGD RPPMLAHHLS LPKTSAEMAT IEKLLQFQDS VPCKIRAKRG CATHPRSIAE 360 RVRRTRISER MRKLQDLVPN MDKQTNTSDM LDLAVDYIKD LQRQFKALSE NRSRCTCVNK 420 QQP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0009s0400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216409 | 0.0 | AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453467.1 | 0.0 | transcription factor bHLH122 isoform X2 | ||||
TrEMBL | A0A2K2BA98 | 0.0 | A0A2K2BA98_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s22290.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0009s0400.2.p |