PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0009s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family RAV
Protein Properties Length: 379aa    MW: 44100.4 Da    PI: 9.7857
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0009s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.5e-104288254
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                            ++kG+    k+g W A+I+       + +r++lg+f t++eAa a++ a+ kl+
  SapurV1A.0009s0070.1.p 42 KFKGIV-PQKNGHWGAQIYA------NhQRIWLGTFKTEKEAAMAYDSAAIKLR 88
                            688886.455899****999......44**********99************98 PP
2B382.15.4e-26168263183
                             EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                             f+k ltpsdv+k++rlv+pkkfa ++               +g+   +++l+++d+  +sW+++++y+++s+++v+tkGW++Fv+++
  SapurV1A.0009s0070.1.p 168 FQKDLTPSDVGKLNRLVIPKKFAVKYfpyifkdvedqrvlnSGV--DDTELIFYDRFMKSWKFRYCYWRSSQSFVFTKGWNKFVREK 252
                             89*****************************9988777765334..6789************************************* PP

                             T--TT-EEEEE CS
                      B3  73 gLkegDfvvFk 83 
                             +Lke+D++ F+
  SapurV1A.0009s0070.1.p 253 KLKEKDIIAFY 263
                             **********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-2142103IPR001471AP2/ERF domain
CDDcd000188.06E-234299No hitNo description
PROSITE profilePS5103216.954297IPR001471AP2/ERF domain
PfamPF008476.9E-64288IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-154299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-174297IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-30164264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-26166264IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-22167263No hitNo description
SMARTSM010197.8E-17168277IPR003340B3 DNA binding domain
PfamPF023622.3E-23168263IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589168275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQDQDASSSM ISSSKSPIIN VETLSLSNKL GRLHSNIGNV EKFKGIVPQK NGHWGAQIYA  60
NHQRIWLGTF KTEKEAAMAY DSAAIKLRST DLHRNFPWND HNVKEPSFQN QYSTERILNM  120
IRDGSYQQLF VDFLMKQSRR EEICGSTDDL NGRRVHVDDE QFSCMQLFQK DLTPSDVGKL  180
NRLVIPKKFA VKYFPYIFKD VEDQRVLNSG VDDTELIFYD RFMKSWKFRY CYWRSSQSFV  240
FTKGWNKFVR EKKLKEKDII AFYTCAFPEK VQEQHGQGQY FSMIDIVYCN EQSGKVAGFN  300
HMEAMQRELA VILKQNMRKK LQRDGKELKE RVLKKKELKN KVKGKGFRLF GVQISDVFHL  360
ETDQVALQLQ PSSQTGAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2516726213100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0009s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025403.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-110RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLB9GYV20.0B9GYV2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-110RAV family protein