PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0008s0120.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YC

Protein Properties

Length: 304aa MW: 33309.8 Da PI: 4.618

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0008s0120.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.6	4.7e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++dedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl +iv + SapurV1A.0008s0120.2.p 1 MQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSFHLKQCVQTFNVFDFLREIVSK 69 889**************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	4.7E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.19E-19	1	71	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.1E-17	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MQTDEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKR GAKTLNSFHL KQCVQTFNVF 60 DFLREIVSKV PDLGGPDAAG DERGVSKRRK VADDEDNDSD EECSRNRTND TIQTSSSGRG 120 RGRGRGRGRG RGTRSMEKET AAQHGKFEDD PGIGHQNDKH GPKLGRLDMD YEPKDSKDNI 180 PSGRNLQAPV RDFDLNMDLD ENGETQPVLA SVPTIPASSL KKPDTTVPAS SLTKPDTAVP 240 ASSLKKPDTA VPASSSTKPP PELKHEEVPG WSLEDIEKMD INPVQLANLN ARIDEDEDYD 300 EED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	7e-13	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	130	RGRGRGRGRGR
2	122	131	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0008s0120.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035029.1	1e-155	PREDICTED: uncharacterized protein LOC105132976 isoform X1
Refseq	XP_011035030.1	1e-155	PREDICTED: double-strand break repair protein MRE11-like isoform X2
TrEMBL	A0A2K2C208	1e-137	A0A2K2C208_POPTR; Uncharacterized protein
STRING	POPTR_0001s23260.1	1e-144	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-43	NF-YC family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0008s0120.2.p