PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0007s0550.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 25717.2 Da PI: 7.4191 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.7e-07 | 78 | 127 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ h + Er RR+r ++++ L +llP +K +K++i ++A + I++L+ SapurV1A.0007s0550.1.p 78 RCNRHMMSERLRRERERNGYLALHSLLPLG-----TKKDKSSIIQMAAKRIQELE 127 577899**********************97.....7****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-11 | 74 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.071 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-5 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-6 | 81 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-4 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDGFFQDEWQ GDGFWYDIDP VNRSAFVPYL RRPEAGSEIR EESSSRGGRP TNMNKRMVEF 60 MRRSLSVDIE TQKPDSNRCN RHMMSERLRR ERERNGYLAL HSLLPLGTKK DKSSIIQMAA 120 KRIQELETYK RIMVRRNGEI EERLTESGVL NVESTKVRIE VANPSSGMDP MVDIIKCLKS 180 LGAEIRSVQS QISDQQLTAV MDIETEIEAA EIENAVKRTL ARY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 91 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0007s0550.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465178.1 | 1e-116 | transcription factor bHLH92 isoform X2 | ||||
TrEMBL | B9HUD7 | 1e-114 | B9HUD7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s08760.1 | 1e-115 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0007s0550.1.p |