PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0005s0440.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 26524.6 Da PI: 8.7932 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H SapurV1A.0005s0440.1.p 79 YKCTVCNKAFPSYQALGGHKASH 101 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.94E-10 | 79 | 153 | No hit | No description |
SMART | SM00355 | 0.0062 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.0E-14 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.2E-13 | 130 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 131 | 153 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MALEALNSPT TASPLNYEET WIKRKRSKRS RSESPSTEEE YLALCLIMLA RGGSTISTAK 60 KTAHASPAPP QPPALDLSYK CTVCNKAFPS YQALGGHKAS HRKSSSSEST IDTAAENPSN 120 STTTTTNGRT HECSICHKTF PTGQALGGHK RCHYEGTIGG SNSSSTGAAI TTSDGGAVKV 180 GGVSQSKSQR SGGGFEFDLN LPALPEFESP RIGQQALYGD QEVESPLPGK KPRLMFSLKQ 240 EKMDVGSSQI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0005s0440.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145317 | 1e-146 | EF145317.1 Populus trichocarpa clone WS01123_D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458091.1 | 1e-135 | zinc finger protein ZAT10 | ||||
TrEMBL | A0A2K2C5R1 | 1e-133 | A0A2K2C5R1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30260.1 | 1e-133 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-38 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0005s0440.1.p |