PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s1050.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 652aa    MW: 68326.1 Da    PI: 6.5167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s1050.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29e-09142186144
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                             r++W++ Ed  l+ av++lG g+W++I r      Rt+ q+  rw
  SapurV1A.0004s1050.3.p 142 RKPWSEAEDMELIAAVQKLGEGNWASIVRGEFkGDRTASQLSQRW 186
                             789************************875444689999998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.271137194IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-12138191IPR009057Homeodomain-like
SuperFamilySSF466895.1E-12138192IPR009057Homeodomain-like
SMARTSM007179.3E-9141192IPR001005SANT/Myb domain
PfamPF002494.0E-7142186IPR001005SANT/Myb domain
CDDcd116602.52E-12143191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MLWRHLAYRH DLPEKFDDGA HPLDDDDSDL ESELEAFPSV TSEASTEAAA CVKVLIASGL  60
PSDSTHPNNT TVEAPLTINI PNGRSLRATS ENSQPAVMQG VNISVPVSVQ KLSLPAQTSC  120
PASEIYDANG SRSGIFPPRR KRKPWSEAED MELIAAVQKL GEGNWASIVR GEFKGDRTAS  180
QLSQRWAIIR KRHGNMNVGN VSSAPQLSET QRAARDAVKM ALDPYPIAKS SITNSAGTTS  240
TKPPNNCVPP TITAEASPAQ HQCQQPMTTK SSSIWPVGSS AKSHVMLAKA SEKSILSSDP  300
VRAAAVAAGA RIATQSDAVS LLKAAQAKNA VHIMPTGSSS IKSSMTGGVS THLDVNPNNR  360
FISSGMATAP TTTRPSGPCP GLPKAISPPS QMKAASSTAQ PPQSTPVTSL NVPSEQTNSG  420
LAKVTLLPPQ MKASSSTAQP TQSFPATSLN AQPEPTNPDL AKATLLPPQM KASSSTAHPT  480
QSFPVTSLNV QSAQTNAESL PKQGMVTIKD TKASGSQEVA NGQVQKDGAH VSVKEPSEHV  540
QEVIAALTNQ EAELKSQVGT FESSNGSPKL IMNESGLVNF TGNQVDGSQN ADDNKMTCSP  600
IKEAENQSAV QENGGNQSER QAELPSTVSN ESCIKVDSIS KTEASNEMLD G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s1050.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016944.10.0PREDICTED: mucin-5AC-like isoform X1
TrEMBLB9GN480.0B9GN48_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.27e-40MYB_related family protein