PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0004s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 396aa MW: 43070.7 Da PI: 4.9409 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 5e-10 | 241 | 289 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq SapurV1A.0004s0280.1.p 241 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 289 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.29E-11 | 236 | 293 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-17 | 236 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.567 | 238 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 239 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-7 | 241 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 244 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDGSGDNIDD LGYQNTGESV MNCPSSGMNT NPFYVSAWDP VVSLSQPGNF GGSSIVSQSG 60 FSNSPFPIVM ENPGISNLVH YPPGSGFVEL MPKFPGFGSG NFSEMVGSLG LTEYGQSAHT 120 GCPPNYNEEA NSAQHQEDQL LSEETTTVAS PNGKRRKRLT ESNSPFDPNK STEGELQKDL 180 SGESRDNAEE LDEKTQTTEQ NPGPSLRGKQ VAKQAKDNAQ SGEAPKENYF HVRARRGQAT 240 NSHSLAERVR REKISERMRM LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA 300 TVNPELQIDV ERILSKDILH SRGGNAAILG FNPGMNSHPY SHRIFQPGIQ AIPNSNPPPH 360 AVLDNELQSY FQMGFDSSSA IDNLGPNAAR LKPEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0004s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451921.1 | 0.0 | transcription factor bHLH74 isoform X1 | ||||
TrEMBL | A0A2K2BHD6 | 0.0 | A0A2K2BHD6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s11540.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7585 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-88 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0004s0280.1.p |