PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0430.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 390aa    MW: 44010.1 Da    PI: 6.9869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12197248155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  SapurV1A.0003s0430.1.p 197 QRMNHIAVERNRRRLMNDHLNSLRSLMPPS---YVQRGDQASIIGGAIDFVKELE 248
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.81E-12195252No hitNo description
PROSITE profilePS5088815.212196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16196265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13197262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10202253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MESLQGPINP GFIGEHNLDL ECLERGFINT ESLKIGEEKP YFSSPIFEDR MPFLQMLQTL  60
ETPPTFPFKE PSFQTLLRLQ HLKKPWNMNN YYMPETECQV QPPELESCVT HDIADLHSPV  120
KSETKELPNP DSNSCIEGVS PEPAEPYSRS SVPWATQPQA VPDIKTQFSK STTIITRERR  180
KRKRKRPTKN NEDIESQRMN HIAVERNRRR LMNDHLNSLR SLMPPSYVQR GDQASIIGGA  240
IDFVKELEQL LQSLEAQKRM RKMEAGSTIG ISSNQYCTSP PQSDILAEKG GNCEEKRTVK  300
KKSEAAEIEV TAVQNHVSLK MKCQRSPGQL LRAIVALEEL SLTVLHLNIS SSQATILYSF  360
NLKLENECKL GSTDEVAAAV HQIFSSFKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177186ERRKRKRKRP
2178183RRKRKR
3178184RRKRKRK
4179184RKRKRK
5179185RKRKRKR
6197208RMNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450770.10.0transcription factor bHLH67 isoform X2
TrEMBLA0A2K2BKJ00.0A0A2K2BKJ0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-76bHLH family protein