PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0060400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YC
Protein Properties Length: 220aa    MW: 24224.6 Da    PI: 5.558
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0060400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.31.3e-54361391101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+d+aaa++rtdifdfl
  Spipo9G0060400  36 QLQMFWNYQrqeVAHASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDVAAAIARTDIFDFL 130
                     89*****9966677899****************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr+e+
  Spipo9G0060400 131 VDIVPREEV 139
                     ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.89E-3321130IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.0E-3751121IPR009072Histone-fold
PfamPF008081.7E-2058121IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDNQPPPPPP PPPPPSQQPP YQQAPFHHLL QQQNQQLQMF WNYQRQEVAH ASDFKNHQLP  60
LARIKKIMKA DEDVRMISAE APVLFAKACE LFILELTIRS WLHAEENKRR TLQKNDVAAA  120
IARTDIFDFL VDIVPREEVK DEGLGLVPGG GGGGSATGVP YYYPSIGQAA PPGMMMGQPA  180
QPWQPMWQQG LPMEGTYLAG TSLDPQGDVG HQPPPPGSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5344136395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798939.14e-94nuclear transcription factor Y subunit C-1
RefseqXP_017699898.14e-94nuclear transcription factor Y subunit C-1
RefseqXP_017699899.14e-94nuclear transcription factor Y subunit C-1
RefseqXP_026662989.14e-94nuclear transcription factor Y subunit C-1
SwissprotQ9FMV57e-82NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2H3ZUS49e-93A0A2H3ZUS4_PHODC; nuclear transcription factor Y subunit C-1
STRINGXP_008798937.11e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-73nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]