PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0056000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 206aa    MW: 21859.4 Da    PI: 10.1716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0056000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-2055104255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Spipo9G0056000  55 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEGAAVAYDEAALRFKG 104
                     8********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-3254113No hitNo description
Gene3DG3DSA:3.30.730.105.1E-3354113IPR001471AP2/ERF domain
PROSITE profilePS5103224.76455112IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2255114IPR016177DNA-binding domain
PfamPF008473.7E-1355104IPR001471AP2/ERF domain
SMARTSM003801.7E-3855118IPR001471AP2/ERF domain
PRINTSPR003672.1E-115667IPR001471AP2/ERF domain
PRINTSPR003672.1E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MTAMVSALTQ VIGTTQEGAS GAHPGISRRN PNPPVAVAPP AAQPEEQGSS VRRKHYRGVR  60
QRPWGKWAAE IRDPKKAARV WLGTFDTAEG AAVAYDEAAL RFKGSKAKLN FPHRVQAQTT  120
DPSLRVATRA PPAPSYPDLL QYAQLLRGGD EELQNVASNI YAPGFFTASS PSAYSGASSL  180
PFSGIPPFGS TSSSADDPQQ QTEKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2754117468ATERF1
3gcc_A1e-2754117468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053182e-31AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149612e-31AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-31CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683838.18e-57PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH548e-46EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLM0T5633e-55M0T563_MUSAM; Uncharacterized protein
TrEMBLM5XU382e-55M5XU38_PRUPE; Uncharacterized protein
STRINGEMJ251383e-56(Prunus persica)
STRINGGSMUA_Achr6P08140_0015e-56(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]