PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0050100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 265aa    MW: 30179.2 Da    PI: 8.9001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0050100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-5191381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+++yL+kkv  +k+el +vi+evd++k+ePw+L++  ++ +  ++ewyfFs+r +ky+tg+r nrat+sg+Wkatg+dk +
  Spipo9G0050100   9 VPPGFRFHPTDEELLHFYLRKKVGMEKFEL-DVIREVDVNKIEPWELQErcRIGSgLQSEWYFFSHRGRKYPTGSRMNRATASGFWKATGRDKCI 102
                     69****************************.9***************963444442445************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s+  e+ g++ktLvfy+grap ++ktdW+mheyrl
  Spipo9G0050100 103 RSSAAEKLGMRKTLVFYSGRAPCAQKTDWIMHEYRL 138
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-567156IPR003441NAC domain
PROSITE profilePS5100556.2369156IPR003441NAC domain
PfamPF023652.5E-2710138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAPPGGGVP PGFRFHPTDE ELLHFYLRKK VGMEKFELDV IREVDVNKIE PWELQERCRI  60
GSGLQSEWYF FSHRGRKYPT GSRMNRATAS GFWKATGRDK CIRSSAAEKL GMRKTLVFYS  120
GRAPCAQKTD WIMHEYRLYS VGNEEEDWVV CRVFRKKDCF KVGRDESPRH RQAPVDQPPQ  180
CAQFQLQGLS GGHAYGPMQR RGGGVDLCST EWLRFDRGVT SRSGDDGGAA EWRYRQAAQP  240
PQIGPLGHHR EMEIDVIAQR LVCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-48915917168NO APICAL MERISTEM PROTEIN
1ut4_B5e-48915917168NO APICAL MERISTEM PROTEIN
1ut7_A5e-48915917168NO APICAL MERISTEM PROTEIN
1ut7_B5e-48915917168NO APICAL MERISTEM PROTEIN
3swm_A6e-48815919171NAC domain-containing protein 19
3swm_B6e-48815919171NAC domain-containing protein 19
3swm_C6e-48815919171NAC domain-containing protein 19
3swm_D6e-48815919171NAC domain-containing protein 19
3swp_A6e-48815919171NAC domain-containing protein 19
3swp_B6e-48815919171NAC domain-containing protein 19
3swp_C6e-48815919171NAC domain-containing protein 19
3swp_D6e-48815919171NAC domain-containing protein 19
4dul_A5e-48915917168NAC domain-containing protein 19
4dul_B5e-48915917168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022973417.12e-86protein BEARSKIN2-like
SwissprotQ9C8782e-84BRN1_ARATH; Protein BEARSKIN1
TrEMBLA0A3S4P2836e-84A0A3S4P283_9MAGN; Protein BEARSKIN2-like protein
STRINGAquca_014_00032.16e-84(Aquilegia coerulea)
STRINGSolyc06g063430.1.12e-84(Solanum lycopersicum)
STRINGXP_006415110.12e-84(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.12e-81NAC domain containing protein 15
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]