PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo9G0038600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NF-YB | ||||||||
Protein Properties | Length: 146aa MW: 16139 Da PI: 5.0201 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 39.2 | 1.6e-12 | 13 | 108 | 8 | 96 |
NF-YB 8 lPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lP + v ri+k l + + k+a e + fi ++++ a+d c++ kr+ i+++d++ al ++ f +++epl+v l+ +r ++ Spipo9G0038600 13 LPRTIVRRIVKDKLSRGGdrdgdgmNVHKEALLAFSESARIFIHYLSATANDICKESKRQIISAEDVFKALEEIEFPEFIEPLRVSLEDFRRKNA 107 66677777777777655411111124667777778899999**************************************************8776 PP NF-YB 96 e 96 + Spipo9G0038600 108 A 108 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-32 | 12 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.9E-9 | 12 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.18E-23 | 13 | 128 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
KGEEGPGAVV EELPRTIVRR IVKDKLSRGG DRDGDGMNVH KEALLAFSES ARIFIHYLSA 60 TANDICKESK RQIISAEDVF KALEEIEFPE FIEPLRVSLE DFRRKNAAKK AESKPRERKR 120 KAEGDAAAAK NGEADGGEGV DDAEEN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 120 | RRKNAAKKAESKPRERKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010245113.1 | 4e-54 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A1D1Z1G0 | 9e-62 | A0A1D1Z1G0_9ARAE; DNA polymerase epsilon subunit 3 (Fragment) | ||||
STRING | XP_010245113.1 | 2e-53 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 7e-30 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Spipo9G0038600 |