PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo9G0032600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Trihelix | ||||||||
Protein Properties | Length: 222aa MW: 24941.5 Da PI: 6.5208 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.6 | 1.9e-19 | 107 | 195 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++e+ +l+rg+l++ +We+v+ ++ +++ +s +qCk+k +nl+kryk+++++ +++ + s+s++p+f+++e Spipo9G0032600 107 EWSDSAIACLLDAYTEKYVQLNRGNLRGRDWEDVATVVsercDKQKSGKSVEQCKNKVDNLKKRYKAERQRLSSG-NLSVSHWPWFKKME 195 5********************************9998877668889999*************************9.89999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.1E-22 | 105 | 197 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
VNSHHCFAST DEDAVAAAPN DFPSQLPEDE DDEGDDGDSN RQRLERKGRG TPGSGTLVGS 60 HPSRPDVKRK DREELSDGGS PYCFNSGGSG KKPRMSSSMD YRKDREEWSD SAIACLLDAY 120 TEKYVQLNRG NLRGRDWEDV ATVVSERCDK QKSGKSVEQC KNKVDNLKKR YKAERQRLSS 180 GNLSVSHWPW FKKMEQIVGN VEKPCLSEKV VFRPTLIPEE W* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020687242.1 | 7e-75 | uncharacterized protein LOC110103038 isoform X1 | ||||
Refseq | XP_020687243.1 | 2e-75 | uncharacterized protein LOC110103038 isoform X2 | ||||
TrEMBL | A0A1D1XIL0 | 1e-105 | A0A1D1XIL0_9ARAE; Uridylate kinase (Fragment) | ||||
TrEMBL | A0A1D1XKX1 | 1e-104 | A0A1D1XKX1_9ARAE; Uridylate kinase (Fragment) | ||||
STRING | XP_008813118.1 | 4e-71 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 8e-59 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo9G0032600 |