PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo9G0016600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TCP | ||||||||
Protein Properties | Length: 189aa MW: 20701.5 Da PI: 7.674 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 87.1 | 4e-27 | 42 | 109 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g+RdRRvRls+++a +++dLq++LG+ ++sk ++WLl +a ++i++l+ +++++ Spipo9G0016600 42 GGKDRHSKVTTVRGLRDRRVRLSVPTAVQLYDLQERLGLSQPSKVVDWLLDAARHEIDKLPPLPFPPG 109 78***********************************************************9966654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.907 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.0E-25 | 43 | 103 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTRDPYEDGR KAEKLTGATP SLRGWAAELG DPRIVRVSRS LGGKDRHSKV TTVRGLRDRR 60 VRLSVPTAVQ LYDLQERLGL SQPSKVVDWL LDAARHEIDK LPPLPFPPGG FFPICPPPPT 120 TAPWHPAESS DLRDPRLGFC QVVEGEELHG FRPPPPMSSS YVGAAAQINN FLMGVSEEHL 180 QSSALHGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406310.1 | 1e-45 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_018682833.1 | 1e-45 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_018682834.1 | 1e-45 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_018682835.1 | 1e-45 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_018682836.1 | 1e-45 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_018682837.1 | 1e-45 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A1D1YQI4 | 1e-46 | A0A1D1YQI4_9ARAE; Transcription factor TCP5 (Fragment) | ||||
STRING | GSMUA_Achr6P27420_001 | 4e-45 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 3e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Spipo9G0016600 |