PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0015500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NF-YB

Protein Properties

Length: 368aa MW: 36611.5 Da PI: 4.4243

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0015500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	127.9	3.7e-40	16	109	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++dr+lPia v+rim++++P n+kis+ a e vq cvsef+sf+t+ea+dkc+ ekrk + ++dl+w++a lGf++y++pl+++l+ +re+ g Spipo9G0015500 16 DKDRLLPIAHVARIMRQAVPMNGKISRSAMEAVQRCVSEFVSFITGEAADKCRLEKRKVLRAEDLIWCMAVLGFDEYIAPLNAHLMTFREMAGS 109 78****************************************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.3E-36	14	118	IPR009072	Histone-fold
SuperFamily	SSF47113	7.14E-29	18	120	IPR009072	Histone-fold
Pfam	PF00808	2.0E-20	20	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-9	48	66	No hit	No description
PRINTS	PR00615	3.8E-9	67	85	No hit	No description
PRINTS	PR00615	3.8E-9	86	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MAESDDEERE NDAAWDKDRL LPIAHVARIM RQAVPMNGKI SRSAMEAVQR CVSEFVSFIT 60 GEAADKCRLE KRKVLRAEDL IWCMAVLGFD EYIAPLNAHL MTFREMAGSS IRSKSRAGDV 120 GDGPGKVAGL ESGAVETGAA GLSPAGEGEI DGGAGDFGRG SVVGIDGGAG STAPGTVMAG 180 NGGWNPGRAF GVYDGDGGGA VMDCNPGGAF GIYDGDGGGA DMTGNSGFAR GGADVIYSVT 240 GGGAAIAGNS GFTPGGAFGV HAGDGGRAVM TGNSGLTPGD GVGTDGGAGD FPPGCGAMAG 300 IHGGASDAPA SGFTAREPHL YGGDMIVAAP QNCRTPPCYP RQMAMDGGAA SISDRRFVGE 360 SPFGLGQ*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MAESDDEERE NDAAWDKDRL LPIAHVARIM RQAVPMNGKI SRSAMEAVQR CVSEFVSFIT  60
GEAADKCRLE KRKVLRAEDL IWCMAVLGFD EYIAPLNAHL MTFREMAGSS IRSKSRAGDV  120
GDGPGKVAGL ESGAVETGAA GLSPAGEGEI DGGAGDFGRG SVVGIDGGAG STAPGTVMAG  180
NGGWNPGRAF GVYDGDGGGA VMDCNPGGAF GIYDGDGGGA DMTGNSGFAR GGADVIYSVT  240
GGGAAIAGNS GFTPGGAFGV HAGDGGRAVM TGNSGLTPGD GVGTDGGAGD FPPGCGAMAG  300
IHGGASDAPA SGFTAREPHL YGGDMIVAAP QNCRTPPCYP RQMAMDGGAA SISDRRFVGE  360
SPFGLGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	6e-31	16	105	4	93	NF-YB
4awl_B	6e-31	16	105	5	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	6e-31	16	105	5	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-40	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Spipo9G0015500