PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo9G0014700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Nin-like | ||||||||
Protein Properties | Length: 160aa MW: 18150 Da PI: 11.3809 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 59.1 | 8.3e-19 | 68 | 115 | 3 | 50 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 k +++ d+s+yF+lp ++AA++L++c T LK+ R++ ++RWPhRk++ Spipo9G0014700 68 KLLTFMDVSQYFHLPAAEAAQKLQICGTSLKKVTRKFLVNRWPHRKVR 115 6799******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.97 | 57 | 137 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.5E-17 | 70 | 115 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MDYPDDYVLP TGTMKLQGSP IIPIQGGHAV EASQPSHAVE GRIKRRGRKK SRHQIQKTGM 60 AAQRERIKLL TFMDVSQYFH LPAAEAAQKL QICGTSLKKV TRKFLVNRWP HRKVRCQNKN 120 KTKNLRSASK VLNLRRDNED SGPRPDRELG TSRDLRVLV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8055 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 2e-08 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo9G0014700 |