PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0052300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family BES1
Protein Properties Length: 322aa    MW: 33644.5 Da    PI: 7.7186
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0052300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822211.12.9e-6531502149
          DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqs 96 
                     ++ r ptwkErEnnkrRERrRRaiaakiy+GLR++Gnyklpk++DnneVlkALcreAGw+ve+DG tyrkg+kp e++e++g sas sp+ss+q 
  Spipo8G0052300   3 SGSRLPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCREAGWIVEEDGSTYRKGCKPAEHMEVVGGSASPSPCSSYQP 97 
                     789******************************************************************************************** PP

          DUF822  97 slkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                     s+ ss+++sp++s+ +sp+sss+  + +   +++++ +sl+p+l+ l+++sss
  Spipo8G0052300  98 SPASSSFPSPASSSFPSPASSSYITNGHNGAVNSSEVNSLVPFLTGLASASSS 150
                     **********************************999*******999887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.8E-634143IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTSGSRLPTW KERENNKRRE RRRRAIAAKI YSGLRMYGNY KLPKHCDNNE VLKALCREAG  60
WIVEEDGSTY RKGCKPAEHM EVVGGSASPS PCSSYQPSPA SSSFPSPASS SFPSPASSSY  120
ITNGHNGAVN SSEVNSLVPF LTGLASASSS ASKAPPPQLQ HLYMRGGSIS APVTPPLSSP  180
TARTPRIKTD WDDPAAPPLW FLPSSSTGGP SSPTFSLVSS NPFGGFLSEV PAARGVSAAM  240
WTPVQSGTCS PAVPEEADVP MPAAPPSEEF AFGGGCGGTC SNENAPLLGP VKAWAGERIH  300
EECGSDDLEL TLGSSKSRSN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-24676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-24676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-24676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-24676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242162.11e-110PREDICTED: BES1/BZR1 homolog protein 4
SwissprotQ9ZV887e-98BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A1D1YRS81e-114A0A1D1YRS8_9ARAE; BES1/BZR1 4 (Fragment)
STRINGXP_010242162.11e-109(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.14e-70BES1/BZR1 homolog 4