PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0028200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TCP
Protein Properties Length: 446aa    MW: 48186.4 Da    PI: 7.0866
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0028200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.52e-37462102135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................sss 68 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai +l+++                            +  
  Spipo8G0028200  46 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAAVAIADLPSLdgtfpdqpllegqtgdegkatqmadddeG-- 138
                     689************************************************************************999998887766555442.. PP

             TCP  69 sa...sec...eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                          + +   ++++ ++++ +++++ + +++a+s+ s++s  s+l+l++ e r kar+rarer +  ++ k+k
  Spipo8G0028200 139 -VevaQ-FeyaNQHQGQEQHRQQQEHLSLTKSACSSTSETSRGSVLSLSRsEIRIKARERARERAATAKKEKDK 210
                     .03322.13456667777777777778999999999**************999**********98887777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-3947207IPR005333Transcription factor, TCP
PROSITE profilePS5136931.05148106IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.315187208IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MTEALLAGHK EQRQGVPEAG AGALGLRPWY EYPSTASRIC RVSRASGGKD RHSKVLTAKG  60
LRDRRVRLSV STAIQFYDLQ DRLGYDQPSK AVEWLIKAAA VAIADLPSLD GTFPDQPLLE  120
GQTGDEGKAT QMADDDEGVE VAQFEYANQH QGQEQHRQQQ EHLSLTKSAC SSTSETSRGS  180
VLSLSRSEIR IKARERARER AATAKKEKDK DGDDGDTQIA AVARHHSLNL NPTSHSSFIE  240
LLTGGGGGHQ HRNHSHGPVT VAQANPAQDF NLKQLRQMPT SSSVVTADYF SQGGLYGAGE  300
KSHQPHGFPA QANFNLAAVA ASATGDHPEM LQHQQQQQFS FLPDHLIPLA VTAAGGDCIN  360
FSISSGVSGF NRGTLQSNFP PPQSLHHLQR LSSPMGGSNL PFFLGTTVQP SAAAWEAQLP  420
NGFDSRLQLY YEGYPHLDLK GKEKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2353107155Putative transcription factor PCF6
5zkt_B1e-2353107155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00063PBMTransfer from AT4G18390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784856.11e-125transcription factor PCF6-like
TrEMBLA0A1D1YX991e-125A0A1D1YX99_9ARAE; Transcription factor TCP2 (Fragment)
STRINGXP_008784856.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2