PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0022800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 386aa    MW: 41557.6 Da    PI: 8.8391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0022800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.5e-31191249259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Spipo8G0022800 191 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSDHNHP 249
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.535185251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-30189251IPR003657WRKY domain
SuperFamilySSF1182906.15E-26189251IPR003657WRKY domain
SMARTSM007748.6E-37190250IPR003657WRKY domain
PfamPF031061.7E-25192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCSYFSERVG GEQGDLADIV RASSCGKVPG QAHQVIPVEW QLSMETINFS PSMESSADDR  60
GNTICDFVGT TFFDGPETAG GLVKVGMVND EGAAASMQRV LSGGNDIRRP GDDFSRVLQI  120
SPREIKPQLL VADRMKTNGG SRSSPLDQEG SRISSSQLLG TKKRKTQTKK VVCIAAPPAG  180
GGRPGGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI  240
TYTSDHNHPW PTQRNSLAGS TRSRPAKNGS SATKSSPSDR KPPLPAVAGH HAVKEEEARE  300
MKKTVDSSEK RELSLVFDAN CKVLMNSSSQ PDDFFADLGE LDASDPLGLA FSTKALMGVE  360
RENKDPLAIF DWAANSSTET RKGGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-24165252280Disease resistance protein RRS1
5w3x_D5e-24165252280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788702.11e-122probable WRKY transcription factor 14
SwissprotO647474e-64WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A2H3XTU51e-120A0A2H3XTU5_PHODC; probable WRKY transcription factor 14
STRINGXP_008788702.11e-121(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-56WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]