PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0022600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NF-YB

Protein Properties

Length: 189aa MW: 20792.5 Da PI: 4.8318

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0022600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	146.8	4.8e-46	1	88	8	95
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +Pianv+rim+kvlP++akis+dake +qecvse+is+vt+ea+++c+ e+rkti+++dl+wa++ lGf+dyvepl++yl+++re+eg Spipo8G0022600 1 MPIANVIRIMRKVLPSHAKISEDAKEAMQECVSEYISYVTAEANQRCHDEQRKTITPEDLIWAMSRLGFNDYVEPLSLYLQRHREFEG 88 8*************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.79E-34	1	91	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-42	1	91	IPR009072	Histone-fold
Pfam	PF00808	2.5E-24	1	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-14	28	46	No hit	No description
PRINTS	PR00615	1.5E-14	47	65	No hit	No description
PRINTS	PR00615	1.5E-14	66	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MPIANVIRIM RKVLPSHAKI SEDAKEAMQE CVSEYISYVT AEANQRCHDE QRKTITPEDL 60 IWAMSRLGFN DYVEPLSLYL QRHREFEGIR RHDPLPRGAR VLPAIAPAPA FAPAPLNTGV 120 YPPPAPPMYN MMDPQGNAPF YYPDDAGSSS GAVAGGADGA IMPEGYYMDG AGWTEGPLYG 180 YDPYNQLK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-45	1	85	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019052731.1	4e-50	PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A1U8Q3Y1	1e-48	A0A1U8Q3Y1_NELNU; nuclear transcription factor Y subunit B-1-like
STRING	XP_010252777.1	3e-49	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-47	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Spipo8G0022600