PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0068000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 113aa    MW: 12206.4 Da    PI: 11.8601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0068000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182069356
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    + GVr+++ +gr+ AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Spipo7G0068000 20 FLGVRRRP-WGRYSAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 69
                    67******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.4E-251108IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.32E-251878No hitNo description
PROSITE profilePS5103220.9691976IPR001471AP2/ERF domain
SMARTSM003806.5E-321982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-292077IPR001471AP2/ERF domain
PRINTSPR003671.3E-82031IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222078IPR016177DNA-binding domain
PfamPF008479.3E-112268IPR001471AP2/ERF domain
PRINTSPR003671.3E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
RAKKSNTGPV EAGTGCGARF LGVRRRPWGR YSAEIRDPAT KERHWLGTFD TAEEAAVAYD  60
RAARSLRGAR ARTNFSHSDT PPGSSVTRPR NQTSSQSRRK DPSLSSCGSR TG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201186381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304399.21e-40ethylene-responsive transcription factor LEP-like
RefseqXP_028198556.12e-40ethylene-responsive transcription factor LEP-like
SwissprotQ9M6442e-39LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A445LKH74e-39A0A445LKH7_GLYSO; Ethylene-responsive transcription factor LEP
TrEMBLC6TIZ94e-39C6TIZ9_SOYBN; Uncharacterized protein
TrEMBLI1JD103e-39I1JD10_SOYBN; Uncharacterized protein
STRINGGLYMA02G07460.15e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.16e-25ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]