PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo7G0066300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Trihelix

Protein Properties

Length: 378aa MW: 41632.3 Da PI: 5.1474

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo7G0066300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.9	7.6e-25	73	156	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +e++ Li++rrem+ ++++k++k lWe++s+km++rgf rsp++C++kw+nl k++kk k++ + + +++ ++++e Spipo7G0066300 73 WALEETRSLIALRREMDGLFNTSKSNKRLWEQISAKMKDRGFDRSPTMCTDKWRNLLKEFKKSKQQCRAA-GGGPPKMSCYREME 156 *****************************************************************99985.66666888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.525	65	129	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.2E-5	66	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.4E-5	69	131	IPR009057	Homeodomain-like
SMART	SM00717	9.7E-5	69	131	IPR001005	SANT/Myb domain
CDD	cd12203	1.07E-27	71	136	No hit	No description
Pfam	PF13837	1.0E-18	72	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MKAMCPSEKA LPLPPPPPPP PVDCDQEEGR DFVMELIGNG KLAAPAPAMM MIPGESSGED 60 HEIRAPKKRA ETWALEETRS LIALRREMDG LFNTSKSNKR LWEQISAKMK DRGFDRSPTM 120 CTDKWRNLLK EFKKSKQQCR AAGGGPPKMS CYREMEELLN ERNRRPAGDA EVDCYLLFSD 180 KVLEEAAAPY GSAEARSAAL SLDHEGLPLA ITDAGAAAAS GMPSWNWEDA RGNGGEGHCG 240 RVITVTCGDY TRKIGINGSA EAIKEAIKAA FGLRTRRAFW LEDRDAVVHS FDRDMPLGTY 300 TLHLDQGLTI KLCLYEEAGE LQVSTVEKTL YTDDDLRDLL GRRGWAGLRE LGGFRTINNL 360 DELQPGAVYE GLRVLGD*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MKAMCPSEKA LPLPPPPPPP PVDCDQEEGR DFVMELIGNG KLAAPAPAMM MIPGESSGED  60
HEIRAPKKRA ETWALEETRS LIALRREMDG LFNTSKSNKR LWEQISAKMK DRGFDRSPTM  120
CTDKWRNLLK EFKKSKQQCR AAGGGPPKMS CYREMEELLN ERNRRPAGDA EVDCYLLFSD  180
KVLEEAAAPY GSAEARSAAL SLDHEGLPLA ITDAGAAAAS GMPSWNWEDA RGNGGEGHCG  240
RVITVTCGDY TRKIGINGSA EAIKEAIKAA FGLRTRRAFW LEDRDAVVHS FDRDMPLGTY  300
TLHLDQGLTI KLCLYEEAGE LQVSTVEKTL YTDDDLRDLL GRRGWAGLRE LGGFRTINNL  360
DELQPGAVYE GLRVLGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-38	67	154	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250844.1	1e-167	PREDICTED: trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-136	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U7ZBE5	1e-165	A0A1U7ZBE5_NELNU; trihelix transcription factor GT-1
STRING	XP_010250844.1	1e-166	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-108	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Spipo7G0066300

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]