PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0058400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARR-B
Protein Properties Length: 506aa    MW: 55586.5 Da    PI: 5.192
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0058400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.14.1e-23198250255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +r+ Wt+eLH  F +av+qL G++kA Pk+ile m+ + Lt+++v+SHLQkYRl
  Spipo7G0058400 198 KRVAWTEELHLLFTHAVDQL-GINKASPKKILERMGRPELTRSNVASHLQKYRL 250
                     699*****************.********************************8 PP
2Response_reg49.13.1e-17151211107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vlivd ++  ++  ++ le+ gy  v+ ++  ++al++l++ d  +Dl+l+  +m +md+++ll++ +    ++p+i+++a g   +a e+l+aG
  Spipo7G0058400  15 VLIVDYNEQSLNDTARKLESYGY-TVTPCSRVSSALDILNKADggFDLVLTEARMLDMDAFALLEQVKLTF-DIPVIMMSAGGGLGLAMECLNAG 107
                     89*********************.******************99***********************9999.9********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a+ +l Kp d +++
  Spipo7G0058400 108 ASFYLQKPLDCAAI 121
                     ********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.4E-2412129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-2513156No hitNo description
SMARTSM004482.4E-1113124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.96214129IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-1315122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.13E-1616117No hitNo description
PROSITE profilePS5129410.805194253IPR017930Myb domain
SuperFamilySSF466893.94E-16198254IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-22198250IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-23198254IPR009057Homeodomain-like
PfamPF002495.5E-8199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDSTVSTLFG DGFGVLIVDY NEQSLNDTAR KLESYGYTVT PCSRVSSALD ILNKADGGFD  60
LVLTEARMLD MDAFALLEQV KLTFDIPVIM MSAGGGLGLA MECLNAGASF YLQKPLDCAA  120
IATIWQHVAL KRKKSSAAAA QILENSGPSS SAKRGERRGT EGSPANGKEK EVEEDSDNEE  180
DDDEIGRQEN TVKEKMGKRV AWTEELHLLF THAVDQLGIN KASPKKILER MGRPELTRSN  240
VASHLQKYRL YLTKSKYGRK KRFCGFSLNR KRSVFESGPK HLTKSHRLQM ETFSQGSSAD  300
DRRPVKKEIE LQSANMPYID LRMTEQTGTI GAMDMPRRSI PCPGINLSDI SDILSSDPHE  360
ARQPGDFGYG SNYVGLQLHA GIGQISLAQY TFLEPEPINP AIGASEDEHM DYTILDQLLQ  420
EELAPGETRS SMLMDFQSSS PRQSDSMTPS NGRHLSADKP CEELQAGNEV STNGFADIGL  480
DNMMSLLLNH QITRDATTAK EPSRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14199254762ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-43response regulator 1