PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0049400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 211aa    MW: 22932.7 Da    PI: 4.3472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0049400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-11421162394
                     .HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  23 aeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ae+h   +  +e++ + +ed e++  W++k+++  ++ks++y+l+ ++ +Fvk +gL+ gDfv++++d+  ++++v+
  Spipo7G0049400  42 AEAHlpVLMAREGIYMCMEDmETSHMWTFKYRFwpNNKSRMYILE-NTGDFVKRHGLRLGDFVMLYRDD-YRQRYVI 116
                     555566333457788999999999*******99777888888888.********************654.4444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.2E-438122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-1740127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1541116IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-853117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVGPFSPADA AAAAPPAPSP ANPATGIGMD FGISDIYFDK EAEAHLPVLM AREGIYMCME  60
DMETSHMWTF KYRFWPNNKS RMYILENTGD FVKRHGLRLG DFVMLYRDDY RQRYVIRAQK  120
ASYRDAPSAP AESAASRSGG TKDHPAGEAG DCYAGYSDAY DDMCLAMDAT FTFSADFTVG  180
LPNGILDSPA ALESVPSLGS IENLSLDDFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-354012225107B3 domain-containing transcription factor FUS3
6j9b_D2e-354012225107B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZI363e-80A0A1D1ZI36_9ARAE; B3 domain-containing transcription factor FUS3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-36B3 family protein