PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0044400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 175aa    MW: 18691 Da    PI: 10.0025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0044400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-2098147255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae+Aa+a+++a+++++g
  Spipo7G0044400  98 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEGAARAYDKAALRFRG 147
                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-3698161IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2298157IPR016177DNA-binding domain
PfamPF008472.5E-1398147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3398156IPR001471AP2/ERF domain
PROSITE profilePS5103225.51598155IPR001471AP2/ERF domain
PRINTSPR003676.4E-1299110IPR001471AP2/ERF domain
CDDcd000188.95E-26106157No hitNo description
PRINTSPR003676.4E-12121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRFMVASPAA GSADSDDSLV FPTAGSSTTE LVAPAPFSGH RLEQETATMV SALALVVAGK  60
GANGEGEASQ FHCSTPTAMA SPEETSSFYH EPAGTRRRYR GVRQRPWGKW AAEIRDPHKA  120
ARVWLGTFET AEGAARAYDK AALRFRGSRA KLNFPENVRL RPPHPAAPHP PPPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2599158666ATERF1
3gcc_A3e-2599158666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598740.12e-38ethylene-responsive transcription factor ERF113-like isoform X1
SwissprotQ9FH543e-37EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A4D8Z6V43e-38A0A4D8Z6V4_SALSN; EREBP-like factor
STRINGXP_010096464.14e-37(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]