PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0032900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 544aa    MW: 59703.8 Da    PI: 5.8416
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0032900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.51.3e-21126240186
        trihelix   1 rWtkqevlaLiearremeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                     +Wt+ +v++Li ++  ++++ +++                             +kk++W++vs++m+e+g  +sp+qC++k+++lnkryk+++++
  Spipo7G0032900 126 KWTDAMVRLLIMVVYCVGDEGGTDGggagghhqgnkpakkggqtactavlqqqQKKGKWKSVSRAMMEKGHYVSPQQCEDKFNDLNKRYKRVNDI 220
                     7************9977777777544556666677777777788888888888****************************************** PP

        trihelix  68 ekkr.tsessstcpyfdqle 86 
                      +++ +++++++  ++d ++
  Spipo7G0032900 221 LGRGtACRVVENQGLLDTMD 240
                     ****5599999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-19124266No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEGNGLAEGI IPGMLGLEMP LHQPHHQIPA PPPTQQQHHH HRQVLLFPSQ LHQNQAHHTD  60
PDHNAAAASK YAYSFGGGAK VKPAPSPDDE PCAAFGEDVG MDLAVRQQSQ PGVSASSTPS  120
PWQRMKWTDA MVRLLIMVVY CVGDEGGTDG GGAGGHHQGN KPAKKGGQTA CTAVLQQQQK  180
KGKWKSVSRA MMEKGHYVSP QQCEDKFNDL NKRYKRVNDI LGRGTACRVV ENQGLLDTMD  240
HLSPKAKEEV RKLLNSKHLF FREMCAYHRS CAAASSAGEA ASSASTLQPH HQSCEAFAGS  300
DPYSLHQQQC SHLADISGAP EFMAVGEEVG TALKIMTTSS DKMAGERGED DGMAADEDDD  360
EEDEDEDDDY DDDDDEDDEH NGVAEGGGLR QHRKGAHGDD EDGYTGTGVK RQRRSSSLSP  420
FFQLSSSQHQ LKGELASLTG SAEQQRQWLS WRAVELEERR VNCGRRALEL EKQRFKWLRF  480
SGNKEREMER AKLENEHLSL ENERMLLLLR QKEFELACQG NGGAVEHIHN NATNHDGPSA  540
SAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PVS61e-122A0A0K9PVS6_ZOSMR; Sequence-specific DNA binding transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-53sequence-specific DNA binding transcription factors