PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0011000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GeBP
Protein Properties Length: 423aa    MW: 44270 Da    PI: 6.8374
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0011000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.91.1e-31195294197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                     klfqr+w+ eDei++L G++ f+ak+g   +p + +dafye + + + +k+sk+ql++K+rrL+kK++++ ++ +k+g +p+f+k+h+q +f+ls
  Spipo7G0011000 195 KLFQRVWTAEDEIAVLEGMVAFQAKHGGagDPAAAVDAFYESIPRPLRVKFSKTQLSDKMRRLRKKYETNLRRsKKKGADPAFAKSHEQASFQLS 289
                     579**********************998789999************************************9997899****************** PP

          DUF573  93 kkiWg 97 
                     kkiW 
  Spipo7G0011000 290 KKIWA 294
                     ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-29197293IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAPKPRPSPS SSSSSGSESG SAASSDDEQQ PQQRQPPQET QPSPPSKKAL SNPKTPSAAA  60
ADSSSSSGED EEEDGSDENS DSPSRKPPPP GEPSATAAAK APPSESESES GSDSSDSEAP  120
APAPPPPPRR PSRGADPSIK PIASKPMDGG AAKPKRAAAA AASEVKLTPE KRKRPAAADA  180
GEDPSPAAAA ASGKKLFQRV WTAEDEIAVL EGMVAFQAKH GGAGDPAAAV DAFYESIPRP  240
LRVKFSKTQL SDKMRRLRKK YETNLRRSKK KGADPAFAKS HEQASFQLSK KIWAPKRPAA  300
PPAPSDEREE EDEEGEEEDG PAFAASAAGN GAAAPPRPEW GGPGDRARRN LREAINLLQK  360
DPGNVLPAGS MTRALELLKP ATAKAMDERW GRHFLAGAKL MLERTELTKD LLKCLVNALD  420
SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XET59e-62A0A1D1XET5_9ARAE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-18DNA-binding storekeeper protein-related transcriptional regulator