PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0010400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 492aa    MW: 53588.9 Da    PI: 7.5838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0010400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3958.1e-1211334902373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lLl+cAea++++ +++ +al+++ +e +s +g+p+qRl ay++e+L ar   s+ ++y+ l+++        + l+ ++++++++P++kf+++
  Spipo7G0010400 133 KRLLLACAEALAEDRAAKFKALVQETREVVSITGEPLQRLGAYMLEGLVARQEASGATIYRNLRCEGR------DLLSHMQILYDICPYFKFGYM 221
                     689*********************************************************99999877......589999*************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     +aN aI eav +++rvHi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++          +++erLa + +++++p++f++ v+ + ++++ 
  Spipo7G0010400 222 AANGAIAEAVRHDDRVHIVDFQIAQGTQWVTLLQALAARPGGPPRVRITGLVD------GDGGAVAERLAAVSRRFRIPVDFRP-VTAAAQEVTA 309
                     *****************************************************......77889********************.7999****** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      +L+v++gEalaV++ lqlh+++desv++ ++rd +L++vk+l P+v ++veqe+++n+++Fl+rf+eal+yy+a+f+s+e+ lpr s eri vE
  Spipo7G0010400 310 AMLDVREGEALAVSFTLQLHHTPDESVEVGNPRDGLLRMVKGLGPRVATLVEQESNTNTTPFLTRFAEALDYYAAMFESIEVALPRGSAERIGVE 404
                     *********************************************************************************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +++l+r+ivnvvaceg+er+erhe l+kWr+rl++aGF+p pls ++++ ++ ll  ++++ yr+ ee+g+++lgWk+r L+s+SaW
  Spipo7G0010400 405 KQCLARDIVNVVACEGRERVERHELLGKWRSRLRMAGFGPFPLSRYVNEVIRGLLGAYSGN-YRLREEDGAVLLGWKQRDLISASAW 490
                     ***********************************************************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.675106472IPR005202Transcription factor GRAS
PfamPF035142.8E-118133490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDSRQLFRHS LPGEVISFKT AAAAAGASAW SQLPAPVKFN LGYSPDSPFS SPLDCDAFPA  60
PSAATQGRHS TPPAEPTGSK ALQRIETMVM APDNEVAAAA ATTTSSSSSR RHDADADENL  120
RSRKRQRAGP EVKRLLLACA EALAEDRAAK FKALVQETRE VVSITGEPLQ RLGAYMLEGL  180
VARQEASGAT IYRNLRCEGR DLLSHMQILY DICPYFKFGY MAANGAIAEA VRHDDRVHIV  240
DFQIAQGTQW VTLLQALAAR PGGPPRVRIT GLVDGDGGAV AERLAAVSRR FRIPVDFRPV  300
TAAAQEVTAA MLDVREGEAL AVSFTLQLHH TPDESVEVGN PRDGLLRMVK GLGPRVATLV  360
EQESNTNTTP FLTRFAEALD YYAAMFESIE VALPRGSAER IGVEKQCLAR DIVNVVACEG  420
RERVERHELL GKWRSRLRMA GFGPFPLSRY VNEVIRGLLG AYSGNYRLRE EDGAVLLGWK  480
QRDLISASAW H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-571364908374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923996.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2H3YEH10.0A0A2H3YEH1_PHODC; chitin-inducible gibberellin-responsive protein 1-like isoform X1
STRINGXP_008797425.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-150GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]