PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0001600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 369aa    MW: 40849.2 Da    PI: 9.8031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0001600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19132232199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  Spipo7G0001600 132 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDANGQEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFSRMD-PEGK 224
                     89**************************666667778***************9989999999***9.********************876.7777 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++++
  Spipo7G0001600 225 LVMGFRKA 232
                     88877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-30128233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-20129231IPR015300DNA-binding pseudobarrel domain
CDDcd100177.83E-24130231No hitNo description
PROSITE profilePS5086311.251132233IPR003340B3 DNA binding domain
PfamPF023622.1E-16132232IPR003340B3 DNA binding domain
SMARTSM010199.8E-21132233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
SNTFSAPAGI SFGPLSNSNV NTSIPSIVKD EASVHLVGLV SSPPSDSNNA GRISSAHSLR  60
QTHASHLVKQ SFHNAHNPVD SSGETQTQVR NVRSRVEGRC RNQLLPRYWP RITDQELQQI  120
SGDSNSVVTP LFEKMLSASD AGRIGRLVLP KKCAEAYFPA ISQPEGLPLK VQDANGQEWV  180
FQFRFWPNNN SRMYVLEGVT PCIQSMKLQA GDTVTFSRMD PEGKLVMGFR KASNVSNEQD  240
IQAVKGGNGY PMTKEGNSGS KNSCSKVDKS VFIQNERIPS KSYVLPPKRK GTAPGSKNKR  300
LRIENEDSIE LKLTWEEAQE LLHPPPNHKP SIVVIEGHEF EEYEKQIVPK SLIILRDIKI  360
TNRRLQIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-701102392131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806760.11e-142B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G41e-121Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1D1YYL31e-162A0A1D1YYL3_9ARAE; B3 domain-containing protein Os07g0563300
STRINGXP_008806760.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-102HSI2-like 1