PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0067500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 279aa    MW: 30778.1 Da    PI: 10.3283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0067500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-134286147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E+e+++++ +++  ++Wk+I + +g ++t+ q++s+ qky
   Spipo6G0067500 42 RESWTEGEHERFLEGLRLYN-RSWKKITNFVG-TKTAIQIRSHAQKY 86
                     789****************8.66*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-73687IPR009057Homeodomain-like
SuperFamilySSF466898.97E-163692IPR009057Homeodomain-like
PROSITE profilePS5129418.0883791IPR017930Myb domain
TIGRFAMsTIGR015571.1E-154089IPR006447Myb domain, plants
SMARTSM007175.9E-94189IPR001005SANT/Myb domain
PfamPF002494.7E-114286IPR001005SANT/Myb domain
CDDcd001678.50E-84487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAEMMRGSGF TSPSLFTFAL GTAAAGDYGK KGRKPYTMTK SRESWTEGEH ERFLEGLRLY  60
NRSWKKITNF VGTKTAIQIR SHAQKYFLKL QRNGADVHVP PPRQKQKAAN TYPQRDLKDM  120
VLLQTSMGHP MPVIFPASRT VMSGTSMLMH TAGGTVQPVD NYTSFHGNKG NSHAVEGTQV  180
CSGIILPSSS RSLLEHKVPK QGRPSSLQGA LPDFARVYRF FGNIFDPNTE SHIEKLNEMD  240
PIDIQTKRLL SSHGEANQSP GSFSTGVAIA DQIFCKLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YK811e-73A0A1D1YK81_9ARAE; Transcription factor ASG4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.38e-64LHY/CCA1-like 1