PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0056800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 282aa    MW: 31521.6 Da    PI: 6.5357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0056800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.3e-53131401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yL++k+++++l++  +i+evd+yk++Pw+Lp+++  +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v+ +
  Spipo6G0056800  13 LPPGFRFHPTDEELVVYYLCRKAAHQHLPV-PIIAEVDLYKYDPWQLPEMALFGKREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVTPA 106
                     79****************************.88***************76667899*************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy+g+apkg+kt+W+mheyrl
  Spipo6G0056800 107 gSDRAVGIKKALVFYSGKAPKGVKTNWIMHEYRL 140
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-649167IPR003441NAC domain
PROSITE profilePS5100560.91713167IPR003441NAC domain
PfamPF023651.0E-2714140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLRTRDAEAE LNLPPGFRFH PTDEELVVYY LCRKAAHQHL PVPIIAEVDL YKYDPWQLPE  60
MALFGKREWY FFTPRDRKYP NGSRPNRAAG SGYWKATGAD KPVTPAGSDR AVGIKKALVF  120
YSGKAPKGVK TNWIMHEYRL ANINRAAKKG GGSLRLDDWV LCRLYNKKND WEKRRPVADA  180
GEDTGSESLR TPESDVENEV APPEVAASAA PEEYAASSPE FPRVVKEDND WFMDLNLDDL  240
QSSFMAFNGA APVRDLSYQD YLLAGLASPQ LRPGIGGLPP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-9511733174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020254522.11e-136LOW QUALITY PROTEIN: NAC domain-containing protein 68-like
SwissprotQ52QH41e-115NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A3S3NV451e-131A0A3S3NV45_9MAGN; NAC domain-containing protein 68-like protein
TrEMBLA0A444BTQ21e-130A0A444BTQ2_ENSVE; Uncharacterized protein (Fragment)
STRINGXP_008787999.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-91NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]