PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0049800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CAMTA
Protein Properties Length: 1077aa    MW: 119978 Da    PI: 8.4283
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0049800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11567.8e-49321454117
            CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                      +krwl+++ei+a+L n++  +++ ++  +p sgsl+L++r ++r+frkDG++w+kkkdgktv+E+hekLK+g+ e +++yYa++e++p+f rrc
  Spipo6G0049800  32 ASKRWLRPNEIYAVLSNYNLLKIQPQPVMNPGSGSLLLFDRNMLRNFRKDGHNWRKKKDGKTVQEAHEKLKIGTDERIHVYYARGEDDPNFYRRC 126
                     489******************************************************************************************** PP

            CG-1  99 ywlLeeelekivlvhylev 117
                     ywlL+++le+ivlvhy+++
  Spipo6G0049800 127 YWLLDRSLERIVLVHYRQT 145
                     ****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.43525151IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-5928146IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4332144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.96E-7384470IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-15575690IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-14583692IPR020683Ankyrin repeat-containing domain
CDDcd002041.26E-13583687No hitNo description
PROSITE profilePS5029713.973595699IPR020683Ankyrin repeat-containing domain
PfamPF000231.1E-5628659IPR002110Ankyrin repeat
SMARTSM002484.6E-6628657IPR002110Ankyrin repeat
PROSITE profilePS5008811.434628660IPR002110Ankyrin repeat
PROSITE profilePS500967.254780806IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.15E-6793866IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.1795817IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.895796822IPR000048IQ motif, EF-hand binding site
PfamPF006120.075798816IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0063818840IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.816819843IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011820840IPR000048IQ motif, EF-hand binding site
SMARTSM000150.71899921IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.15E-6899926IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500969.048901929IPR000048IQ motif, EF-hand binding site
PfamPF006120.099902921IPR000048IQ motif, EF-hand binding site
ProDomPD0103142.0E-2010161066IPR002673Ribosomal protein L29e
PfamPF017791.2E-2210181057IPR002673Ribosomal protein L29e
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MEPGGAAQLA ASEIHGFHTT ADLDIGKLLD DASKRWLRPN EIYAVLSNYN LLKIQPQPVM  60
NPGSGSLLLF DRNMLRNFRK DGHNWRKKKD GKTVQEAHEK LKIGTDERIH VYYARGEDDP  120
NFYRRCYWLL DRSLERIVLV HYRQTSEDNA NQQLSAAVEC KDNFSLANSL HASPSTPLSS  180
TSGSNHVETS GSLVFSDEIN STKDCATITG TFLISIDGTG YGISAVDKFS ELENPDLTID  240
MINKFDWASL VEPQPSSDPN ALPYYQDIER GQAFRNHGNL EGLGHAQPTS MSTLTNLSAV  300
SQPVGGCLQL SEVVQETVHM HAIPDTGTSK ALQSQNSFIQ WDYVVDDIPG SLNNTEPGCQ  360
ASDDHEFKKL SIENEPYRSE EVFTITDISP AWSYADEETK VIVVGYFRES HKNIANSKMF  420
VVYGDACVPA EMIQLGVYRC NLLPNTRKPG LINFYLTLDK QTPVSQVMDF EVRPPTSSST  480
NAISLQDADD SEPDQKDFYV LIRLVRLLFS SSNNLSILSN VVSSNALKGA KRFLSATSSS  540
LEKDWIHLPK LVEKNEISIQ SINQQLFELV LKNKLREWLS TKLAEGRRTT ELDNQGLGVI  600
HLCSILDYTW AAHLFKASGL SIDFRDVYGW TALHWAAYCG RVKMVAALLS SGANPSLVTD  660
PTPQFPGGCT AADLASNQGH EGLGAYLAEK ALSAHFAAMN LSGNVTNPSA RASSEAPNSE  720
NIESGSSEQE VLLKYSLAAY RNAADAADRI HGALRERSMR LHVKAAELSS SQEDAGFIIA  780
ALKIQKAYRN HNGRKMMKAA ARIQGTYRTW QARKNFLNLR RHAIRIQAAF RGLLVRKQYR  840
QIIWSVGVLE KAVLRWRLKR KGLRGLQIEP DGVPAAAGEE KNVGEEDFFR ASREQAEERV  900
DRSVVRVQAM FRSHRAQQEY RKMKLAHDRA KLEYDEFANY DENGQAQFEE DPLTPPPPVR  960
GYFGPFVVTS SGGPARASTR GAEGSINGLQ ERRQKTLICR SHLEAWTTAP GASAGMAKSK  1020
NHTAHNQSFK AHRNGIKKPR RHRKTSTKGM DPKFLRNQRY ARKHNKPNGS TSEQEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Cb9e-271016107516060S ribosomal protein L29E
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786234.10.0calmodulin-binding transcription activator CBT isoform X2
TrEMBLA0A1D1Y2X20.0A0A1D1Y2X2_9ARAE; Calmodulin-binding transcription activator 5
STRINGXP_008786234.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.11e-157calmodulin binding;transcription regulators