PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo6G0045700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C3H | ||||||||
Protein Properties | Length: 171aa MW: 18964.4 Da PI: 8.3181 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.6 | 4.2e-13 | 37 | 63 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG C +Gd+C+F+H++ Spipo6G0045700 37 PGEPECNYYMRTGRCDFGDKCRFNHPR 63 5899*********************96 PP | |||||||
2 | zf-CCCH | 37.5 | 4.1e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tG Ck+G++Ck++H++ Spipo6G0045700 99 QPVCQYFLKTGSCKFGATCKYHHPR 123 689********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.9E-6 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.704 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-10 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-7 | 40 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-6 | 42 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-6 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-7 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-10 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-6 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.46 | 141 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 60 | 141 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEEGGSRPSA DTGLEESMWQ LSLGGGVSNQ PAYPERPGEP ECNYYMRTGR CDFGDKCRFN 60 HPRNRVVNVL PFTRPFHLFD NIAAASASPG VEYPERVGQP VCQYFLKTGS CKFGATCKYH 120 HPRREGAVSP VHLNIFGYPM RKGEKECSYY VKNGNCKFGA TFGKEPGLCH * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417930.1 | 3e-57 | PREDICTED: zinc finger CCCH domain-containing protein 6-like | ||||
Swissprot | Q2QT65 | 4e-50 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1D1Y113 | 1e-62 | A0A1D1Y113_9ARAE; Zinc finger CCCH domain-containing protein 6 | ||||
STRING | XP_004296815.1 | 2e-55 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 4e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo6G0045700 |
Publications ? help Back to Top | |||
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