PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0041300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 492aa    MW: 54486.9 Da    PI: 4.8288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0041300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-16297344355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h  +ErrRR+++N++f  Lr+l+P+      +K++Ka+iL  +++YIk+Lq
  Spipo6G0041300 297 GKHVLAERRRREKLNQGFLALRSLVPSV-----TKMDKASILGDTIDYIKQLQ 344
                     57999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-8103151IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088818.279294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-16295348No hitNo description
PfamPF000103.7E-14297344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19298361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-20298362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-19300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSKTWTNLWC TRLKNFFRAC RSDLAPSELS TNNPGPGQQP ISGRHAADDG DVDDGAESTY  60
DSRALEEYRI EDLEMPGEPK LIVTAVEKGA PQEDCSDYCG LHEYCRRSAS STWSLRETVV  120
CIPLSGGVLE IGTTDWVQED PDLTRQVKNV FRACSSEHAL SEVSACNPGP GQQPISGHHA  180
EDDGDVDDGA ESTSDCRALE ESRVEDLEML EEPKLNVTAL EKGAPPEDCS DYGGLLEHRR  240
RSAFSAWRPR EVPIVMQQGG SAQEILKLVL RTIPHFYSGW EDESSPKSTE GEDLRSGKHV  300
LAERRRREKL NQGFLALRSL VPSVTKMDKA SILGDTIDYI KQLQRRTEEY EARIRQMESE  360
KTTIAPKVFA SDGGERMTNP RRRSQASDVT TRAGSKRQRA SCNDDELVNG GSLHVSVIDT  420
DVLVEMKCQN VDGLLVRIME ALDELRLDTT SITSASTDGT FKVEIRAKVI EINGKRASIV  480
QVKKALYQLL P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13299360970Transcription factor MYC2
5gnj_B2e-13299360970Transcription factor MYC2
5gnj_E2e-13299360970Transcription factor MYC2
5gnj_F2e-13299360970Transcription factor MYC2
5gnj_G2e-13299360970Transcription factor MYC2
5gnj_I2e-13299360970Transcription factor MYC2
5gnj_M2e-13299360970Transcription factor MYC2
5gnj_N2e-13299360970Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294306RSGKHVLAERRRR
2302307ERRRRE
3303308RRRREK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-43bHLH family protein