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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Spipo6G0041100 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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| Family | bHLH | ||||||||
| Protein Properties | Length: 289aa MW: 32069.8 Da PI: 10.3698 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 34.6 | 3.4e-11 | 158 | 200 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r rrRR+++N++f r+l+P+ +K++Ka+iL +++Y k+Lq
Spipo6G0041100 158 RTRRRREKLNQRFLAFRSLVPSV-----TKVDKASILGDTIDYYKQLQ 200
569*******************8.....8******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.386 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 3.8E-13 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.27E-14 | 157 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.5E-8 | 159 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 160 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.50E-9 | 160 | 204 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence Send to blast |
MCISFSYLPG IGVLMHVRLL PPLSAAALFL AIAKISGKAF KTQRPLWLSG ANGVDSKVQE 60 DPDLTRQVKN VFRAAAAATM PSRRASEESR VEDLEMPEEP KLNVTAVEKG APPEDCSDYG 120 GLLEHRRRSA FSAWRPRKVP IVMQQGGSSQ EILKLVLRTR RRREKLNQRF LAFRSLVPSV 180 TKVDKASILG DTIDYYKQLQ RRTEEYEARI RQMESEKTTT APKVFASDGG EQMTNPRRRS 240 QASDVTTRAG SKRQRASCNG GELVNGGSLH MSVIDTDVLV EMKCQTGF* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 159 | 164 | RRRREK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP932 | 33 | 109 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G63650.3 | 1e-15 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Spipo6G0041100 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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