PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo5G0047000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 262aa MW: 29529.5 Da PI: 7.8604

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo5G0047000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.7	1.1e-12	135	179	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+ eE+ l++ + ++G+g+Wk+I+r++ R++ q+ s+ qk+ Spipo5G0047000 135 TWSDEEHRLFLLGMDLHGKGDWKSISRHFVVSRSPSQIASHAQKF 179 6******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.466	128	184	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-14	130	183	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-10	132	182	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.7E-13	133	182	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.7E-9	134	178	IPR009057	Homeodomain-like
CDD	cd00167	1.27E-8	135	180	No hit	No description
Pfam	PF00249	8.7E-10	135	178	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEMVANNFPG VNDECAHILS MLESELLEDP ETDLDDQTLW RRLAAANPGT NPEKLEAQFR 60 AVMAENDAAM AGALPFPGYL DLQTQQRQAM AMHQQQQQYF YPPPLLRPPL AAVDRGIVEA 120 LKQALPSRHT TKNTTWSDEE HRLFLLGMDL HGKGDWKSIS RHFVVSRSPS QIASHAQKFF 180 KRNKITLNDR RQPSKLPFSA LNHLLQQPGG RISSHGRVNQ LIQLPPPVYN LDTPTQDYPV 240 QLRRSATALR REGTDDRIPL S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-23	MYB family protein

Link Out ? help Back to Top
Phytozome	Spipo5G0047000