PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0045600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 22667.7 Da PI: 7.591 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.7 | 2.6e-13 | 112 | 156 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+ eE+ l++ + ++G+g+Wk+I++++ + Rt+ q+ s+ qk+ Spipo5G0045600 112 AWSDEEHRLFLLGMDLHGKGDWKSISQYFVLSRTPSQIASHAQKF 156 7******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.634 | 105 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-16 | 107 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-14 | 109 | 159 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.8E-9 | 109 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 112 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-10 | 112 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.82E-9 | 112 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAANNFPDTN AVCANVLRML ERELLVDLDE PSLYQKLAAA NPGANPEQLQ AQFYAVLEDY 60 NAVMAGVRPV PNYDSYLIQT LPSPAATAES ISALIESLKQ TLPNRRTTKN VAWSDEEHRL 120 FLLGMDLHGK GDWKSISQYF VLSRTPSQIA SHAQKFFKRL KKRQQNVQDI TTSNNFSQQP 180 GYILKNVPVN YSAQLPMPVD NI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-26 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0045600 |